rs49111476 SNP Detail

Summary

• ID
  rs49111476
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55254303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTG TCGGGCTCCT CACCCCCTTC
  W
  CTTGGTTTCT TAATGACCCC CTCCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52722739	NES15566706	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	A	T	T	T	T	T		A	T	T	T		T
ss139575876	ENSMUSSNP6984890	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss324641589	CHEV_14_55635683	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49111476					SNP	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52722739	NES15566706	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55254303 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	752 bp distal
Gm63347	predicted gene, 63347	1045 bp upstream
Ngdn	neuroguidin, EIF4E binding protein	within coordinates
Rr369830	regulatory region 369830	1652 bp downstream
Rr369831	regulatory region 369831	1223 bp downstream
Rr492392	regulatory region 492392	1382 bp distal
Rr492393	regulatory region 492393	1679 bp distal
Rr492394	regulatory region 492394	1056 bp distal
Rr492395	regulatory region 492395	564 bp distal
Rr492396	regulatory region 492396	667 bp distal
Tssr125743	transcription start site region 125743	1275 bp downstream