rs49112966 SNP Detail

Summary

• ID
  rs49112966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:24790551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAG CCAATTTACA TTCCCGAGTT
  Y
  CCTGCCTTTG CTGGAAAGTT CAGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61262562	NES16880293	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	C	T		C	T	T	C		C
ss146998815	ENSMUSSNP5814567	ENSEMBL	ENSEMBL_Sanger	f	SNP		T			C
ss323275255	CHEV_10_24634459	CHEVERUD	SCREENING_POP	f	SNP							T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49112966					SNP	T	T	T	C	C	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262562	NES16880293	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24790551 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	554 bp downstream
Med23	mediator complex subunit 23	1193 bp downstream
Tssr92746	transcription start site region 92746	967 bp upstream
Tssr92747	transcription start site region 92747	1040 bp upstream
Tssr97085	transcription start site region 97085	839 bp downstream
Tssr97086	transcription start site region 97086	885 bp downstream
Tssr97087	transcription start site region 97087	919 bp downstream
Tssr97088	transcription start site region 97088	977 bp downstream
Tssr97089	transcription start site region 97089	996 bp downstream
Tssr97090	transcription start site region 97090	1027 bp downstream
Tssr97091	transcription start site region 97091	1418 bp downstream
Tssr97092	transcription start site region 97092	1438 bp downstream
Tssr97093	transcription start site region 97093	1462 bp downstream
Tssr97094	transcription start site region 97094	1478 bp downstream
Tssr97095	transcription start site region 97095	1492 bp downstream
Tssr97096	transcription start site region 97096	1757 bp downstream