rs49113111 SNP Detail

Summary

• ID
  rs49113111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71247958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGGTCTGGT ATGTGGATCT CCTTATCAGA AGCTTCAGCA
  GTCAACAGTC AACTCTGGGC TTCTCAGTCC ATCTGAGGTT TTTAAGTGAT TACTTCAATC
  Y
  ATGCTTGGGA CCAGCCTGAG CTAAAGTAAG ACCCTATTAC ACATGGGTCG GTGTGCTGCC
  AAGCCCCAGA AGCTGAGTTC GACTTCTGGG GTGCATAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133274951	ENSMUSSNP6301322	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321817330	CHEV_6_71220968	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49113111					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71247958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17522	CpG island 17522	428 bp proximal
Krcc1	lysine-rich coiled-coil 1	703 bp upstream
Mir8112	microRNA 8112	697 bp upstream
Rr136432	regulatory region 136432	1758 bp distal
Rr146429	regulatory region 146429	within coordinates
Rr379579	regulatory region 379579	1074 bp downstream
Rr379580	regulatory region 379580	within coordinates
Tssr56988	transcription start site region 56988	45 bp downstream
Tssr56989	transcription start site region 56989	601 bp upstream
Tssr56990	transcription start site region 56990	698 bp upstream
Tssr61348	transcription start site region 61348	248 bp upstream
Tssr61349	transcription start site region 61349	226 bp upstream
Tssr61350	transcription start site region 61350	507 bp downstream