rs49115747 SNP Detail

Summary

• ID
  rs49115747
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8688421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACACAAA CACATCCCTA
  GTAAGCCTCA ACCCTTAGTT CTTAAAAAGT CCCACAATCT TTACATATTA AAAGTTCAAT
  CCTCTAAAAA TATCCAATAT CTTTTAAAAT CTAAAGTCTT TACAATTAAG TCTCTTAACT
  GTGGGATCCA CTAAAATACT TCCTTCCCTC ACATGTACAC ATATATAGCA GCAGCACACC
  R
  CGGTGCCTAA AACCTGTGGT CAGTTTTTTA TGTTGGCAGC GCAGGGGGGC GGGAAGGGAT
  GAAAGCAGGT GTGACACTGA GGCAGGGGGA TTCCCTTGAG TAAGGACGAA GCTGAGGCAG
  GGGGATGACA TGGTGATGTA GCCACCCTCT CAATCTGCCT GTCAATCACC AGCTCCGCCC
  ACTCAGCTGT GCTCACCAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61347598	NES16951176	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49115747					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61347598	NES16951176	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8688421 () rs orientation: forward

Symbol	Name	Function Class
Gm56531	predicted gene, 56531	within coordinates
Rr403226	regulatory region 403226	361 bp upstream
Tssr112727	transcription start site region 112727	1118 bp downstream
Tssr115717	transcription start site region 115717	1382 bp upstream