rs49116241 SNP Detail

Summary

• ID
  rs49116241
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184267771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTTGATT CCTCTGTTCC
  CACCTCCTCC AAAGCCCCCA TCACCCACAG AAGCAATCCC TGCTGCAAAC TTCCCAAACT
  TCCTTGCTGT ATATGCAGAC TTCCCTAAGG ACTGAGTCTT ATGGCTCCTT TTAGAGTCTA
  CATGGCCTGC CACCCTGCAC AAGGCTAGGT TGAACCCTGA GTTCTAGACT TCACCTGAAG
  K
  CCAGCATGTC TTCAAACATG TTGAAATGAC CACTCTGCTT ATCTCGGACT GGCCCAAGCA
  TCTTCAATGC AGACCAGTTT CTACCCACCT TTGTCTACCA ACATGTAACC AGTGTCCACT
  GACTCAGCCA CTGATTCTGC TTCACACTTT CAGGTCTGAT GTAAAACTCT TGGGTGAAGC
  TGAGACATTG CCAATCCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss146418846	ENSMUSSNP5753493	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs49116241					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184267771 () rs orientation: forward

Symbol	Name	Function Class
1700112H15Rik	RIKEN cDNA 1700112H15 gene	within coordinates
Gm70799	predicted gene, 70799	within coordinates
Rr425237	regulatory region 425237	103 bp proximal
Rr425238	regulatory region 425238	920 bp proximal
Tssr10585	transcription start site region 10585	1193 bp upstream