rs49116336 SNP Detail

Summary

• ID
  rs49116336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:20412615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGTGAG GTTCAAATGC
  AAGTAAGGTT TTCAGTCATT TTTTTTTTCT TTCAAACTAT TTCTTGAGCT CTTAAACTAA
  TGTGAATTAA ATGTGCTCTT TATGGGAGGT ACTGTGCCAA ATGAAGAAAA CAAGAAAGAT
  TCCTGACTTC ATAAAGGCAA TACTCTAGTG CTTACCTTAG TTTATACTTC TCTGGAATGA
  Y
  TCGTCTCCAG GACATGTTAC ATAATTCCCA ATGAGCCTGA ATCATTTCCT CCATGACGTT
  TAGATATATG AACCTTTAGC TATACGTAAC ATTTAGACAA GCTACCTTAG CACTGCTTAG
  AAACAGCATT TATCCTGGTT CTTAGTAAAC CCAAGGCTCT CTTTCTAATT TCCACTGGTG
  ATTTCAAATG AGTCCAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss63231362	NES17473147	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C		T	C	T		C
ss325739963	CHEV_19_20509741	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs49116336					SNP	C	C	C	C	C	T	C	C	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63231362	NES17473147	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:20412615 () rs orientation: forward

Symbol	Name	Function Class
D19Mit23	DNA segment, Chr 19, Massachusetts Institute of Technology 23	646 bp proximal
Gm32689	predicted gene, 32689	within coordinates
Rr356916	regulatory region 356916	215 bp distal
Rr356917	regulatory region 356917	1786 bp proximal
Rr361508	regulatory region 361508	1799 bp proximal
Rr364130	regulatory region 364130	345 bp distal