rs49116752 SNP Detail

Summary

• ID
  rs49116752
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123301765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTAGACTC TTACAATCTT
  AGAATGTCAC TTGCTCAAGT CAGAATCTGG TACCAATGAA ATGGTGACAG CTTTGCCAAT
  AACAAGAACA TGCTCTTCCA TGGCTAGGAA GGGAGACTGC CACAGGCGGC AGGTCCCAAA
  GATACATGGA GTTTCACAGC CCAAAAATCT AGTGTAACCC CAGAGGTGTC ACTCACCATC
  Y
  GACCCAGCGG TGGCGAACTT GCGTCACGCC GCCCAACACC GTATCGGCTT TACATGGTGG
  TCGTCGCGCT AACCTTCACG GCGCTCTTGC AGAGTTGATG GCTTTCGGCC AGCACCATAG
  CCACCTTGTG TCTCCCGCAT CTCGGCCACT CACAAATAAG GCCCAAGATA TCATCCCCAC
  CATACAACTA CATACTCGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60445527	NES15941782	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49116752					SNP	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445527	NES15941782	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123301765 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	within coordinates
Gm9369	predicted pseudogene 9369	1826 bp downstream
Prss12	serine protease 12 neurotrypsin (motopsin)	1519 bp downstream
Rr397991	regulatory region 397991	1082 bp downstream
Rr584523	regulatory region 584523	1197 bp distal
Rr584524	regulatory region 584524	1062 bp distal
Rr584525	regulatory region 584525	258 bp proximal
Rr584526	regulatory region 584526	803 bp proximal
Rr584527	regulatory region 584527	1194 bp proximal
Snhg8	small nucleolar RNA host gene 8	within coordinates
Snora24	small nucleolar RNA, H/ACA box 24	50 bp upstream
Tssr31551	transcription start site region 31551	434 bp upstream
Tssr31552	transcription start site region 31552	472 bp upstream
Tssr35502	transcription start site region 35502	214 bp downstream
Tssr35503	transcription start site region 35503	799 bp downstream