rs49117173 SNP Detail

Summary

• ID
  rs49117173
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171809991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCAGAACTG TAAAATGACC ACGTGGAAAC AATGAATGGG
  GAAGGAGAAA AAACAGACAC TCTGACTTAA TCATTCCTTT ACTCTCACTT TTGCAGGGGG
  K
  ACCCCTGATG AGTCAGACTG GAAAAATCAA TAGGAAACTG GTAAGTAACA GAGGTTGCAG
  TGGTAGCAGG GAAGGGACTG CATTTCTGCT TTGTTTTGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120005071	PARCsnp_1.16613	PARC_SEQ	INBRED	f	SNP			G	T
ss120007724	PARCsnp_1.06129	PARC_SEQ	INBRED	f	SNP			G	T
ss146179279	ENSMUSSNP2362400	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320121985	CHEV_1_173912555	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs49117173					SNP	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171809991 () rs orientation: forward

Symbol	Name	Function Class
Rr396575	regulatory region 396575	within coordinates
Rr423419	regulatory region 423419	1520 bp distal
Rr423420	regulatory region 423420	within coordinates