rs49118202 SNP Detail

Summary

• ID
  rs49118202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172344866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCG CTCAGCCATC TCTCCAGCCC
  Y
  GTTCATGGCA CTTTTGCGTG GGGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011732	PARCsnp_1.19944	PARC_SEQ	INBRED	f	SNP			C	T
ss120014625	PARCsnp_1.09994	PARC_SEQ	INBRED	f	SNP			C	T
ss146194142	ENSMUSSNP3359108	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320125827	CHEV_1_174447430	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs49118202					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172344866 () rs orientation: forward

Symbol	Name	Function Class
Gm70635	predicted gene, 70635	within coordinates
Rr372460	regulatory region 372460	781 bp upstream
Rr423606	regulatory region 423606	1257 bp distal
Rr423607	regulatory region 423607	906 bp proximal