rs49119458 SNP Detail

Summary

• ID
  rs49119458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23593696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATC TGCCCTTGTT GGATGTTCAA
  Y
  CCCGGGCATG TTACTAAACT TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148056057	ENSMUSSNP3545694	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss321488694	CHEV_5_22894516	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49119458					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23593696 () rs orientation: forward

Symbol	Name	Function Class
4930580E04Rik	RIKEN cDNA 4930580E04 gene	97 bp downstream
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15578	CpG island 15578	1485 bp distal
D5Jcs54	DNA segment, Chr 5, John C. Schimenti 54	835 bp proximal
Gm43058	predicted gene 43058	454 bp upstream
Rr112207	regulatory region 112207	296 bp distal
Rr124896	regulatory region 124896	1295 bp distal
Rr367795	regulatory region 367795	1363 bp downstream
Tssr45359	transcription start site region 45359	1429 bp downstream
Tssr45360	transcription start site region 45360	1401 bp downstream
Tssr45361	transcription start site region 45361	1381 bp downstream
Tssr50260	transcription start site region 50260	1774 bp upstream
Tssr50261	transcription start site region 50261	1682 bp upstream
Tssr50262	transcription start site region 50262	1637 bp upstream