rs49119608 SNP Detail

Summary

• ID
  rs49119608
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:30527605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGATTGT TCTGCCTGTA
  TGGGTTTCAT AAAATAGCAT GCCTCAGGGA AATGTATAGT AGGAATACAT TCTGAGTCAT
  GTCACGGAGG TGAAGAGAGG CTGCACACAG ACGCTCAGCA CTGGGCAGAT GGGATGGACA
  ACGGCTCATT GCTATTCAAG TGTTCTTCTA GTCTGGAGAG GAGATGCAAC ATGATAGGTA
  K
  AAAGGCTTCC TGAATCCCCT AGATACCGAG GTATTCCATA TACTCACTCT CAGTTTTAAG
  TCCTGCAGTA CAAATACATG TAATTTGGAG CCATATGGAT TATATTATAT TTGGGTCATC
  CTATGATCTG TTGGAAGATC GATCCACTGG TCTGTTCATT GGGACTTGGT GGGGCACTCC
  ATGGGACGCA GGGGTTTATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52363864	NES15389128	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs49119608					SNP	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52363864	NES15389128	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:30527605 () rs orientation: forward

Symbol	Name	Function Class
Gm28806	predicted gene 28806	1596 bp downstream
Tssr113087	transcription start site region 113087	1457 bp upstream