rs49120384 SNP Detail

Summary

• ID
  rs49120384
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:33151608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGCATTGG TTACTTTTTT
  TTTTTTTTAA ATCACCCTTA CAAGGAGGGA AATTTTATTT GGCTCGTGGT TCATTGAGGG
  GAAGGCATGA TGGCTGGGAC AGTCTTGGTC TAGAGCTAGG GGACTTGGTA GCATGATTTC
  CTTGCATCTC GGCAGCCGAC AGGGAAGTAG AGAGCTCAGG CTGGAAGCAG AGTTAGCTCA
  Y
  AAACCTCAGT AGTCACTTAG TCTGCTAGCT GTGCCCAGGT CCAAGATATT CACAGCCTTC
  AAAAACAGTG CCAACGGATT CGGTAATCAA ACACACATGT GGGAGACGTT TCAGGGACTG
  AGGGCACACA GGGATGATGT CGGGGGAGAT GGTATGTGTG GAGAATCTCT CCGTGCCCAT
  TAGCAGAGCA CATCTGTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137582085	ENSMUSSNP4607935	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49120384					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:33151608 () rs orientation: forward

Symbol	Name	Function Class
Gm59430	predicted gene, 59430	1104 bp upstream
Rr464869	regulatory region 464869	614 bp proximal
Rr464870	regulatory region 464870	1115 bp proximal