rs49120441 SNP Detail

Summary

• ID
  rs49120441
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:61209119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTTTGTT TTTTGGTTTG
  GTTGGTTTGG CCAATTCCTG CCTCTTTGAC TATGGAAAGA CTGCAATGAA TGTTTCTGGA
  GGTAAGAGGG TGGCTTGGTG GTAAACTACC TGACTGCCAA TGTGAGACCC AAGTTCAAAT
  CTCCACCACC TAAATAAAAG CTGAGTGTGG TCACTAGTAC TAGGAAATCA GGGGGACTCG
  M
  TGGAGCTCAG GGAGCTGATA AGCCTGACCA AATCAGTGAG CTCTCAGCTC GTGAAAGACA
  CTGTCTCATT CCAAAGGAAA AGGAGCACGG GGGAGAGTAA GGGCTCAGCG GGTAAAAGGG
  CTTGCTATGG AAGCCCTGTG GCCTGCAAAT CCTGCAAATC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136538552	ENSMUSSNP5897137	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
ss322978670	CHEV_9_61149644	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49120441					SNP	C	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:61209119 () rs orientation: forward

Symbol	Name	Function Class
Rr680499	regulatory region 680499	1340 bp distal