rs49120755 SNP Detail

Summary

• ID
  rs49120755
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40643950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTGCTA ACAGCTCATA
  TGCTAGCTTT ACAGACTCAG ACTTAAAGCC CCCCTGCTTT AAACCCCCAT TGGCTCCTCT
  TGGCCTGTGT ACCAAGAATG ACCTAATCCC CTCAGTATGT TATTGCAAAA GAAAAAAAAA
  ACTATTCATA ATACTTGCTG GAGGTGGAAA GGAGAAGTCT TTCTAAAGGA AGTATAAAAA
  T
  TTTTTAAAAA TAATAATAAC TTTCCTTTTA CCCCTCCATG TTCTTAGCCA GGTCCCTATA
  ACAAAAGACA GATGATCAAG AGAAAAGCAT CTAAATTTAA TGTCTTCTCT GACATCAGAA
  CATTGGCAAG GAAATGAAGG CTCAAAGAAA TGATTCAACC TGAGTGTTTT TATAGTGGAA
  AGTTGTGGGG CGAGGGGAAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136336819	ENSMUSSNP3524823	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49120755					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40643950 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21598	CpG island 21598	1549 bp distal
D9Mit253	DNA segment, Chr 9, Massachusetts Institute of Technology 253	1424 bp proximal
Gm68229	predicted gene, 68229	1052 bp upstream
Gm68234	predicted gene, 68234	985 bp downstream
Rr1916	regulatory region 1916	247 bp downstream
Rr676903	regulatory region 676903	1697 bp distal
Rr676904	regulatory region 676904	1063 bp distal
Rr676905	regulatory region 676905	684 bp distal
Rr676906	regulatory region 676906	within coordinates
Tssr84462	transcription start site region 84462	1676 bp downstream
Tssr84463	transcription start site region 84463	1640 bp downstream