rs49121039 SNP Detail

Summary

• ID
  rs49121039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152463436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCC ATGCCTTCTC TAGACAGGAC
  R
  TGAGGCCTGA AATCTTGGTG GTCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	MSM/Ms	SM/J
ss147969883	ENSMUSSNP397320	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320562589	CHEV_2_152447252	CHEVERUD	SCREENING_POP	f	SNP	A		A
SNP Consensus Information
SNP					Consensus Type	LG/J	MSM/Ms	SM/J
rs49121039					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152463436 () rs orientation: forward

Symbol	Name	Function Class
Defb25	defensin beta 25	840 bp downstream
Rr567404	regulatory region 567404	543 bp distal
Tssr26844	transcription start site region 26844	599 bp downstream
Tssr26845	transcription start site region 26845	609 bp downstream
Tssr26846	transcription start site region 26846	1560 bp downstream