rs49121137 SNP Detail

Summary

• ID
  rs49121137
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157122735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAGCTTCT GGCACAGAGG CTATAAGGGG ATTCACAGTT
  TAGCTGGAGG AGCGGTGATC ATAGTCCTTC ACTACATCAA ATCCCTGATT GCCCATTGGT
  Y
  ATTGGGAATT TTGCCAAATG CCTCGATGTC TCTTTCTCTA CATCTTCTTA GCCATTGGCA
  ATTCTGATAG GTTTTAACTT CAAATTGTGG CAAGACTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148095681	ENSMUSSNP164745	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320585277	CHEV_2_157106551	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49121137					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157122735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12571	CpG island 12571	976 bp distal
Mroh8	maestro heat-like repeat family member 8	1266 bp upstream
Rpn2	ribophorin II	within coordinates
Rr397441	regulatory region 397441	1766 bp downstream
Rr568459	regulatory region 568459	1659 bp distal
Rr568460	regulatory region 568460	867 bp distal
Tssr21228	transcription start site region 21228	1790 bp downstream
Tssr21229	transcription start site region 21229	1751 bp downstream
Tssr21230	transcription start site region 21230	1685 bp downstream
Tssr21231	transcription start site region 21231	1498 bp downstream
Tssr27165	transcription start site region 27165	1297 bp upstream
Tssr27166	transcription start site region 27166	1260 bp upstream
Tssr27167	transcription start site region 27167	1237 bp upstream