rs49121395 SNP Detail

Summary

• ID
  rs49121395
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156717313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAGAAGC AAGTAGGGAG
  AGGTCAGCCT GGGACCCATC GTACCTACTG TATAGAACCA CCTTGTAGGA AACCCCAAGT
  CAACTTTCTC AAGAGGTGTC CCCCTACACA CACACACACA CACACACATA CTTTTTTTCT
  TTCCTCAAGA CAGGTTTTCT CTCTAGCCCT GGCTGTCCTG GAACTCACTC TGTAGGCCAG
  W
  CTAGCCTGGA ACTCAGATCT GCCTGCCTCC ACCCGCTGTG TGCTGGGATT AAAGGTGTGC
  ACCACCACTG CCAATAAGGT TTTCCCCTTT GTCTCCTTGA CATCAGAAAT GCTAGCTAAG
  GATTGCATTG CACCCAGGAA GAGCACAGTC TGGTTCCTGT GGGAAGAACT CAGCTTCTGT
  GCACATTAAT TTAGAATCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148084971	ENSMUSSNP1281402	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49121395					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156717313 () rs orientation: forward

Symbol	Name	Function Class
Rab5if	RAB5 interacting factor	1830 bp downstream
Rr568378	regulatory region 568378	1086 bp distal
Rr568379	regulatory region 568379	1549 bp distal
Sla2	Src-like-adaptor 2	Intron