rs49121979 SNP Detail

Summary

• ID
  rs49121979
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95899639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAT GACTTTTCAA AGACCAAGGA
  C
  ATCCCCACCC CAAATCCTTA CAGAT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144993571	ENSMUSSNP6942613	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49121979					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95899639 () rs orientation: forward

Symbol	Name	Function Class
Gm32702	predicted gene, 32702	1957 bp upstream
Iqgap2	IQ motif containing GTPase activating protein 2	within coordinates
Rr484141	regulatory region 484141	666 bp proximal
Rr484142	regulatory region 484142	1555 bp proximal
Rr484143	regulatory region 484143	1971 bp proximal
Tssr120725	transcription start site region 120725	1990 bp upstream