rs49122027 SNP Detail

Summary

• ID
  rs49122027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45092210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATCTGGA CGGATCTCCA
  CTGCTCTGAA AGCGGGCTGG CTGTGGTAGG AAGAGTGAAC TGTGAGCTGG GGCAGAGGAT
  GAATTACATG GCAGAAAGAG CCCCTGCTCC CAGAGGAGGG GGCACAGGTT AGTGGGGCAC
  GGCTGGCTGG CTTTGCTGGA TAGCAGGAAT AGTCCCCACA TCAAGGCAGG CTGCCGTGGC
  Y
  TCGCTTTCCT GGGCAGGGAC TCCTGGCCCA GAAGTGGAGC TCTGCAGAGG ACTAGGGGCC
  TGCTTTCCTC ACACCCAGCT CTGTCCCTGT CTCAGATGTC CCAGTATCTC GTTAGGGTCA
  CATCAGCAGG AGCAAAGAAG CAAGGGGACC CAGATGAACT CCTGTCTCAG CACAGAGGGA
  ACTGGAGTGT GGACATTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61388775	NES16766265	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49122027					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388775	NES16766265	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45092210 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			1540 bp upstream
Rr677858	regulatory region 677858			819 bp proximal
Rr677859	regulatory region 677859			1552 bp proximal
Smim35	small integral membrane protein 35			1095 bp upstream
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant