rs49123878 SNP Detail

Summary

• ID
  rs49123878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60731559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAAGTAA TTTGAAATTT
  CTGTTTTCTT TAGAAATTAT TAATCTCTTA GTAAAAGTAC TCTTCAAATC GTATTAGAAA
  CTTTAATTTT GCCTCTTGAC TGGACTACAA ATCGAGAAGA TGACTGCTCT ACTTGGCGTG
  TAAAGTTAAG ATCATACATG CCTGGAGGTC CAGCTGCTTA ACTGGGTCAG CGTGCAGTGG
  R
  AGGGCTTCAG AGCAGTACTA TTTTGAATGG GAGAGCCTAG TATCTCAAGC CTGCAAGGCA
  ATCACTTTCC CCAATAAGCC TTCGCCTCAG CTCCCATAGG GAATTCTCTT TCACCTAAAG
  GGATGAGTAG CTCTCTTAAA AAATTTCAAA ACATCTATTT CCTGTCCCGT TGCTTTTGTT
  GTTGTTTTAT ACTTTATTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146652187	ENSMUSSNP1744482	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49123878					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60731559 () rs orientation: forward

Symbol	Name	Function Class
Gm74814	predicted gene, 74814	174 bp downstream
Rbms1	RNA binding motif, single stranded interacting protein 1	Intron
Rr557735	regulatory region 557735	221 bp proximal
Rr557736	regulatory region 557736	639 bp proximal
Rr557737	regulatory region 557737	1336 bp proximal
Tssr17890	transcription start site region 17890	730 bp upstream
Tssr24237	transcription start site region 24237	1547 bp downstream
Tssr24238	transcription start site region 24238	1619 bp downstream