rs49124545 SNP Detail

Summary

• ID
  rs49124545
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148490120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAT CATTGATTTC CAATAAGGCC
  R
  TGGAAGTTCA ACAGAAACAA GACTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144691535	ENSMUSSNP5948410	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss321718358	CHEV_5_149364886	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49124545					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148490120 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	within coordinates
Cpgi17075	CpG island 17075	1685 bp distal
Cpgi17076	CpG island 17076	163 bp distal
Gm72666	predicted gene, 72666	531 bp upstream
Gm72684	predicted gene, 72684	within coordinates
Rr378792	regulatory region 378792	within coordinates
Rr625194	regulatory region 625194	659 bp distal
Rr625195	regulatory region 625195	31 bp distal
Rr625196	regulatory region 625196	493 bp distal
Rr625197	regulatory region 625197	41 bp proximal
Rr625198	regulatory region 625198	605 bp proximal
Rr625199	regulatory region 625199	884 bp proximal
Tssr49862	transcription start site region 49862	917 bp downstream
Tssr54570	transcription start site region 54570	1629 bp upstream
Tssr54571	transcription start site region 54571	1187 bp upstream
Tssr54572	transcription start site region 54572	1089 bp upstream
Tssr54573	transcription start site region 54573	1037 bp upstream
Tssr54574	transcription start site region 54574	882 bp upstream
Tssr54575	transcription start site region 54575	793 bp upstream
Tssr54576	transcription start site region 54576	622 bp upstream
Tssr54577	transcription start site region 54577	467 bp upstream
Tssr54578	transcription start site region 54578	546 bp downstream
Tssr54579	transcription start site region 54579	683 bp downstream
Ubl3	ubiquitin-like 3	521 bp upstream