rs49125620 SNP Detail

Summary

• ID
  rs49125620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:74111921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CCGGGGGCGG CGGGATGCTG CTGCGGATGC GGAGCTGTGT GAGCCGCTGC
  Y
  TACCCGGCGC AGCCTGGGCT CCGCAGTAGC GGAGCTCGAG CATCCTTTAG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss60279636	NES15784899	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs49125620					SNP	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60279636	NES15784899	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:74111921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9490	CpG island 9490	within coordinates
Ehd3	EH-domain containing 3	within coordinates
Rr530824	regulatory region 530824	75 bp distal
Rr530825	regulatory region 530825	265 bp distal
Rr530826	regulatory region 530826	1347 bp proximal
Tssr145810	transcription start site region 145810	87 bp downstream
Tssr145811	transcription start site region 145811	55 bp downstream
Tssr145812	transcription start site region 145812	25 bp downstream
Tssr145813	transcription start site region 145813	within coordinates
Tssr145814	transcription start site region 145814	19 bp upstream