rs49125733 SNP Detail

Summary

• ID
  rs49125733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46399898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTACCCAG CAGCCATGCC
  CAGTTCCCCT GTCTTTAATC CTCAGTGTAA CTGCTGAAAG ACATCAGAAA AAGAATATTC
  CAGTGCCTAG TCGCACAGTA AAATCATGAC ATTAAACTGC CCCACAGACC TACCAGGGTC
  CTGCGGCTCA TTCATCTCAC ATCCTGGATC TTTTAGCTTC TCTTCCTTTC TTTCCTGACA
  Y
  ACCAACACCC TTTGTCTTCC TCTCAGCACA GTCTTGCTTT CTATTTCAGG GGGAAAAGGA
  AGCCATCAAA AACACACTTA CAAAGGTTCC CACCACCACA GGCACCAGCC AGCCGGTATT
  TCTTCGCAGA CTCTGCCCAC ACCAATCCTT CAGGCCTACC CTCCCCTTCT TTGTGTTTGG
  TTCACATAGA CAGAGGTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149179882	ENSMUSSNP633833	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49125733					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46399898 () rs orientation: forward

Symbol	Name	Function Class
Gm74180	predicted gene, 74180	within coordinates
Rr380764	regulatory region 380764	1004 bp downstream
Rr646777	regulatory region 646777	1781 bp distal
Saa2	serum amyloid A 2	1359 bp upstream
Tssr66700	transcription start site region 66700	1358 bp upstream
Tssr66701	transcription start site region 66701	1879 bp upstream