rs49125733 SNP Detail

Summary

• ID
  rs49125733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46399898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTACCCAG CAGCCATGCC
  CAGTTCCCCT GTCTTTAATC CTCAGTGTAA CTGCTGAAAG ACATCAGAAA AAGAATATTC
  CAGTGCCTAG TCGCACAGTA AAATCATGAC ATTAAACTGC CCCACAGACC TACCAGGGTC
  CTGCGGCTCA TTCATCTCAC ATCCTGGATC TTTTAGCTTC TCTTCCTTTC TTTCCTGACA
  Y
  ACCAACACCC TTTGTCTTCC TCTCAGCACA GTCTTGCTTT CTATTTCAGG GGGAAAAGGA
  AGCCATCAAA AACACACTTA CAAAGGTTCC CACCACCACA GGCACCAGCC AGCCGGTATT
  TCTTCGCAGA CTCTGCCCAC ACCAATCCTT CAGGCCTACC CTCCCCTTCT TTGTGTTTGG
  TTCACATAGA CAGAGGTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149179882	ENSMUSSNP633833	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49125733					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46399898 () rs orientation: forward

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	709 bp proximal
Gm74180	predicted gene, 74180	within coordinates
Rr380764	regulatory region 380764	1004 bp downstream
Rr646777	regulatory region 646777	1781 bp distal
Saa2	serum amyloid A 2	1359 bp upstream
Tssr66700	transcription start site region 66700	1358 bp upstream
Tssr66701	transcription start site region 66701	1879 bp upstream