rs49125820 SNP Detail

Summary

• ID
  rs49125820
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:122888519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACACCTTA GACACAACAA ATGGAAAATG GAGAGTCACA
  CACACCCCCT GTCTTCTCAC CCAACTCGTG GGTCATCTCA CACCTCCCTG GCCCAAAACA
  C
  CGGGACGTGT TTATCCTTCT GGCTTCAGTC TGTTAGGATG GCAACAGCCT GTAGTTCTGA
  GTAGTTAGAC AAAAAGAGTA GGAGGAAGAG AAGGATGGC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321289694	CHEV_4_122671969	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49125820					SNP	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss147361620	ENSMUSSNP7236299	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:122888519 () rs orientation: forward

Symbol	Name	Function Class
Gm54255	predicted gene, 54255	within coordinates
Mycl	Mycl proto-oncogene, bHLH transcription factor	926 bp upstream
Rr599028	regulatory region 599028	728 bp proximal
Rr599029	regulatory region 599029	751 bp proximal
Rr599030	regulatory region 599030	1500 bp proximal
Tssr1289	transcription start site region 1289	888 bp upstream
Tssr38839	transcription start site region 38839	1218 bp upstream
Tssr38840	transcription start site region 38840	1309 bp upstream