rs49126114 SNP Detail

Summary

• ID
  rs49126114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149149983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATTCAAA AGATTTTTTT
  GAATTTGTAA TTTCATGACA TTTTGATGTG ATTTAAAGTT AAAATGACTA TGGAATGATT
  AAAATATTAT TACAAGTCAC TTCAAGGAAA CACAGTTGAA GTATTACAAG CTAAGGGATT
  GCTTTCAGAA ATAAGACGTA TATTGTACAA TCTATTAACC ACTTCCACAC ATTTTTAAAC
  Y
  GAATATAACC ATTTGACTAT TGAAATCATT CTTAAATAAC GATCTCCACT GTGCTATATA
  CATGGCAGGG TTTAAAGAGC CCCTTTACAG TAAAGTTTTC TAAAATACGA TTTAAATTTA
  AAAACAATAC CTACCAGCAC GTCTAACAAC AGTAACGGAA TCCAACTAAT TGCAACACTT
  CTGCATAGCC TAGTAATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136071443	ENSMUSSNP3058336	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321019000	CHEV_3_149107310	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49126114					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149149983 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	within coordinates
Rr398127	regulatory region 398127	1177 bp upstream
Rr587324	regulatory region 587324	437 bp proximal
Rr587325	regulatory region 587325	836 bp proximal
Tssr36100	transcription start site region 36100	840 bp downstream
Tssr36101	transcription start site region 36101	907 bp downstream
Tssr36102	transcription start site region 36102	921 bp downstream
Tssr36103	transcription start site region 36103	1005 bp downstream
Tssr36104	transcription start site region 36104	1030 bp downstream
Tssr36105	transcription start site region 36105	1107 bp downstream