rs49126406 SNP Detail

Summary

• ID
  rs49126406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30815085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTGGTCCT TCATTCGATT TTTCTTCCAT GCCAGTCCCC
  TGCCCTCCAC TGATCCAGTT CATACAGCTA TGGGCCTCTA ACCCTTCCTG TCCCTAGCGG
  R
  GCCCAGCCCT TCCCCCAGCC ACTTTCCTAC AAGTCACGGG GGTGGTTTGT TTTGGCAGCC
  GCTGTGCTGC CTGCCCAGTG ACCTCTGGAG CCCGGAAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322139439	CHEV_7_31900679	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49126406					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30815085 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	275 bp proximal
Hpn	hepsin	370 bp upstream
Scn1b	sodium channel, voltage-gated, type I, beta	864 bp downstream
Tssr71932	transcription start site region 71932	944 bp upstream
Tssr71933	transcription start site region 71933	352 bp upstream
Tssr71934	transcription start site region 71934	1232 bp downstream