rs49126976 SNP Detail

Summary

• ID
  rs49126976
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34932118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAGTA TTGATTTAAA
  AACTAACCGT GATAAACCAA ATACATGTTG ACACAAACAA CACTTTTACA AAAACTATTT
  ACAACATAAA CCAAAAATCA GTTGGAAGTA AAACATTGTT TTACCTTTTT ACAAAGTTCT
  TACGGTTAGT GATGTGCTGT TGTGGGTGAC AAACAAGAGG CTGCGTTGGG GGCCTTGGAG
  R
  GGCTGAGCCA AAGATGGTAA CAGGAGTTCT TCCAGAGAGA TGACACACTG ACTGAAAGAT
  CTCTGATGGG ATGGGTTTCC CCACAGACTA CCCGGGAAAC AGCATTCCGA GCCCCCACCA
  CCCTAAATTC AAAGTCTCTG AGGCAGGAAG ACCTGTGTAG GTTTTTAAGG AGCAGAGACA
  AGGTAGGTTA ATAAGGGCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148805315	ENSMUSSNP4099212	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322156686	CHEV_7_36017712	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49126976					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34932118 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	1866 bp proximal
Gm38989	predicted gene, 38989	within coordinates
Rr645337	regulatory region 645337	236 bp proximal
Rr645338	regulatory region 645338	1062 bp proximal
Rr645339	regulatory region 645339	1938 bp proximal
Rr645340	regulatory region 645340	2000 bp proximal