rs49126980 SNP Detail

Summary

• ID
  rs49126980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47867365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAGCTCA AATGTCAGAA
  CTCACATGGA GGAAGAAGAG AATCAACCCT ACAGTATTGT CTTCTAACCT GCTCTCTGTG
  GTTCATACAG GCTGGACACA CACACAGTTT TGTTTTGTTT TGTTTTGTTT TGTTTTGTTT
  TTTTCTGAGA CAGGGTTTTC TCTGTGTTGC CCTGTCTGTC CTGGAACTCT CTCTGTAGAC
  Y
  AGGCTGGCTT GGCATTTCAG AGATCTGCCT GCTTCTGCCT CCTGAGAGCT GGGATTAAAG
  GCATGTGCCA CCACTGCCAG GCTTCACACA CAATTTTTTT AAAAGTATAA TGTATGATAT
  GAATTACTCC AAGTCTATTC TATACAGAGA ACCGTGGGAC GCCAATAGGC CAGACATGAT
  GACACATACC AGTGGTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145707995	ENSMUSSNP2968848	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49126980					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47867365 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Rr335190	regulatory region 335190	1565 bp distal
Rr335191	regulatory region 335191	965 bp distal
Rr335192	regulatory region 335192	365 bp distal
Rr335193	regulatory region 335193	within coordinates
Tssr144956	transcription start site region 144956	1079 bp upstream
Tssr144957	transcription start site region 144957	1164 bp upstream
Tssr144958	transcription start site region 144958	1260 bp upstream
Tssr144959	transcription start site region 144959	1277 bp upstream
Tssr144960	transcription start site region 144960	1347 bp upstream
Tssr144961	transcription start site region 144961	1388 bp upstream
Tssr144962	transcription start site region 144962	1406 bp upstream
Tssr144963	transcription start site region 144963	1467 bp upstream
Tssr144964	transcription start site region 144964	1965 bp upstream