rs49127670 SNP Detail

Summary

• ID
  rs49127670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4523706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG GGGGTGAAAG GAAGCTGACA
  Y
  CGGAATCTGC ACTCCAGGGA ACTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60964947	NES16164646	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	C	T	T	T		C		T	T	C		C
ss148179413	ENSMUSSNP4789795	ENSEMBL	ENSEMBL_Sanger	f	SNP		T											C
ss322094960	CHEV_7_4472309	CHEVERUD	SCREENING_POP	f	SNP											T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49127670					SNP	C	T	T	T	C	T	C	T	T	T	T	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60964947	NES16164646	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4523706 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	820 bp proximal
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64334	transcription start site region 64334	1296 bp downstream
Tssr64335	transcription start site region 64335	225 bp downstream
Tssr64336	transcription start site region 64336	963 bp upstream
Tssr64337	transcription start site region 64337	1106 bp upstream
Tssr70484	transcription start site region 70484	1169 bp downstream
Tssr70485	transcription start site region 70485	1720 bp downstream