rs49128445 SNP Detail

Summary

• ID
  rs49128445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:138763940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAATGTG GGTGACTTGT
  ATGTTCTATA TTTTAACGTG TTCTAAACTT GCTGGCCCAC CCCGCCCCCT CCATCTCCAT
  TTGACTGTGA CGCTGCATCA TCTGAATGGT AAGCACTTTT TTTAATAAAT GAAGGGGATT
  TAGGTTAGAT TACTTTAAAC CAATTCCTCC AAACTCTCTT CACCTGATCT TAAAGGAATG
  Y
  GCACTATTTG TTCATGCCTC TGGGAGTCTC CAGGGAAGAG AATGCATATT GGGACGCTGT
  GGTGGGTTAA ACAGCCTGGG CTCCTGAAAC AGGACAAGTT ACTCAAAGAC TGAGCAGCCC
  TAAGGAGCAA ACTAGGAATC CATGCCAGGC TTTTCTTTTT TTCCCTGCTC TATTCCTCTC
  CAGAAAACTA AAAACCAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60805747	NES16482128	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49128445					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60805747	NES16482128	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138763940 () rs orientation: forward

Symbol	Name	Function Class
Lhx9	LIM homeobox protein 9	Intron
Rr419772	regulatory region 419772	418 bp distal
Rr419773	regulatory region 419773	657 bp distal