rs49128928 SNP Detail

Summary

• ID
  rs49128928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85923369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGAGTG GAGAACCGAG
  AGTTCCCTGC TCCACCAACC CAGCAAGTGC TAGGGGTACT CAAGAAGGGA GTGAAAGGGG
  ACCTTGAGTT CCAACTGTCC AGGAGAAAGA ACAATGGAGG CGAGAGGGCA GTGAGAGATG
  TCAACTCTTC CTGAGGAGTG AAGTGCAGTT TCTAATGGTT TCTTATATTA ACTAGTTAGC
  Y
  GTGTTCCTTG GCCCAAGAAG AGGAGAGAAG GAGTAGATGC TTGTCCTAGT GGGTGGCTGT
  CTCCACTCCC TTTTCCTAGG ATTTTCCCCC TCTCGTCCAG GTTTTTTTGG GGTCCCAGTC
  TTGCCTAAGG AGCGTGGTCT TTCCTGGGCT AACTTCTTCA GACCTCTCCA TGGCTATAAA
  CGCAATGGAA GAGAGACCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss62953696	NES17409307	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T		C	T	T		T
ss325486763	CHEV_17_86015281	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs49128928					SNP	T	T	T	T	C	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62953696	NES17409307	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85923369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9588	CpG island 9588	1862 bp distal
Cpgi9589	CpG island 9589	482 bp distal
Cpgi9590	CpG island 9590	638 bp proximal
Cpgi9591	CpG island 9591	1147 bp proximal
Cpgi9592	CpG island 9592	1793 bp proximal
Gm55783	predicted gene, 55783	1206 bp downstream
Gm55784	predicted gene, 55784	659 bp downstream
Gm55785	predicted gene, 55785	761 bp upstream
Six3	sine oculis-related homeobox 3	within coordinates
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr149707	transcription start site region 149707	1129 bp upstream
Tssr149708	transcription start site region 149708	931 bp upstream
Tssr149709	transcription start site region 149709	883 bp upstream
Tssr149710	transcription start site region 149710	789 bp upstream
Tssr149711	transcription start site region 149711	765 bp upstream
Tssr149712	transcription start site region 149712	479 bp upstream