rs49128954 SNP Detail

Summary

• ID
  rs49128954
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84574065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGATTATT TCGGGCTTGT
  ATGCACCGGA AATATGTCTT CTCAAACTTA CTTACACACT TGTTTTAGGA TCTTATTTAA
  TCACTTATTT TAATATCAGC CTGGGCTTAT TAATAAATAT ATAACTAATA TGTATTTAGT
  TGATGATAGA CTCGTATTTT TTATTTATTA AAGAACTAGA GCATTCCTTA TGCTGAAATT
  K
  CATCCTCGTA CTTTTAATAT TCCTCTCAGA TACAGCTACA CTGCTGCTTT GTCCCAACCC
  AACCATGTGT ACTTATAATA TCTTACTTAC CACATTCTTC CTACATCTGC CAGTTTCTAA
  TGTCGCTCAC AGAAAGTAGT CTAGGAAATT TTTTGTTATT TTGTGTGTGT GTGTGTGTGT
  GTGTTTAACA TGAGTTATTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60499937	NES16521708	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G	G	G	G	G		G	G		G
ss325261881	CHEV_16_84777422	CHEVERUD	SCREENING_POP	f	SNP											T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs49128954					SNP	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60499937	NES16521708	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84574065 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	1945 bp distal
Jam2	junction adhesion molecule 2	within coordinates
Rr392068	regulatory region 392068	1004 bp upstream