rs49129477 SNP Detail

Summary

• ID
  rs49129477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:75650123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGTGATC AACCTCCCAA
  GTAGCTGGGA TTATGGATGT GGTCATCATG GCCAGCAAGA ATTATATTTT TATGTGTATG
  ACAAATAGAT TGATTTGAAG TTAGTTTTGA CTGAAATCCT TTCCCCAATG TCTAGTTCTC
  TAAAGCAGGA ATATCTATGG GAGAGTTTTT TTATGCTTTT GGCAAACAGC AGTTTCTCAG
  Y
  CCCAGAAGCA CTGACAGGGA AGAACAGATG AGACTCATCA CCTCCCATTC CTTTGAGCAT
  CTTTAAACAG TTAATGTTTC TTAGGAGGGG TGCATCATTT TCTTCACTGA GAAAGGCACT
  GATAAGTTAT CCATGCTCTA GTAAGTAAAC TCTTACCCAC ACTCACTTGA GAAACTCAAA
  TCAAACTCCA TGTGCCCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135330168	ENSMUSSNP1164295	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49129477					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75650123 () rs orientation: forward

Symbol	Name	Function Class
Rr397722	regulatory region 397722	634 bp upstream