rs49129746 SNP Detail

Summary

• ID
  rs49129746
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45979145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTCTTTGA GGTTCTAGTA
  GGAGATTATA ATGGCTTCTG GTCAGCTAGC TCCCAGCTGT GGTCTTTATA GGGCAGAGGT
  GGGAACTCTC AGCGGTTGCC AGCCGCTCTT GCCTTGGGCT GGGCCTTGGA GGAACTCAAG
  GGAAACTCCC AGCCCAGGTC CCCAGCCTGG CTTTCCTAGG GGCTTAGCAG GCTCTAGCCC
  W
  GAAAGCGATA CTCTTGTAGT ACAAGAGTAA CCACAAACCC ATGTGGACTG GAGGCCAGAA
  AGGGTGTTGC CACATGTCAC TCTCCTCCCA TGCCCCTTGG CTGCTGAACA GACGGTAACC
  CCACCCCACC CCGCGCCTGA AGCAAATGTA GATTGACAGT CTTTTCCAAA CTGTCCTTAG
  ATAGAAGCTC TGCTTCTGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136422467	ENSMUSSNP4683756	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49129746					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45979145 () rs orientation: forward

Symbol	Name	Function Class
Gm46110	predicted gene, 46110	within coordinates
Rr383304	regulatory region 383304	659 bp upstream
Sik3	SIK family kinase 3	within coordinates