rs49130367 SNP Detail

Summary

• ID
  rs49130367
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100307486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGCACAG GGCCAGGGTG
  GGCTCTGCGC GAGTCCCCAT TTCACATCCA GTTCGTCCAC TTTTTACCAA TAAGATGGCC
  TCTTCTCTCA GTGGGAGTCC TTCCTTTATC TGCTCTCCAT AAGCAACTTG GTCCAAACTG
  AACCCACCCA CTTCCCACAT AGGAGCAAAA CCACACTTGA AAGAGAAGAA CACAGGGGCT
  R
  GAGAGATGGC TCAGCGGCTG AGAGCGCCAA CTGCTCTTCC AGAGGTCCTG AGTTCAATTC
  CCAGCAACCA CATGGTGACT CACAACCATC TGTAATGAGA TCTGACGCCC TCTTCTGAAG
  ACAGCTACAG TGTACTTATT TATAATAATA AATCAATCTT TGGGCTGCAG CGAGTGGGGT
  TGACTGGAGC AAGCAGAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148475100	ENSMUSSNP6839751	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49130367					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100307486 () rs orientation: forward

Symbol	Name	Function Class
Rr509705	regulatory region 509705	1005 bp proximal
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	Intron
Tssr136419	transcription start site region 136419	554 bp downstream