rs49130431 SNP Detail

Summary

• ID
  rs49130431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57531930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCCGTA CAGGAACCTG
  AGAGACAAGG AGACTTGGGG TCCTGGAGAC TTCTCTGGGT GTGGCTGAAG ACACGCCCCC
  CATGCGTCAA CGCCCCCCCC CCATGCGTCA CCCCCATCCT CACTTGGCTA TGATGGAAAC
  TTCCAGGCCA TTTGGGTCAT CGATGTAATA AAATGTCTCT GTGGGCTCCA CCCGGACCTC
  R
  AAACTGGGCA GCACTAGGAT GGGGTATGAA GACGATGGTG TTGGCATGGC TGCCAGGGCA
  GCATAAGCAC AAGGGCCTCA CCTGCTGGAT GCCCCAAGAC TTACCGTATT CCTTCACCTC
  AAACTCTGCG GAGAAGATCT GCTTCGGCGC ATGTTCGTAA AAGGCTCGGA TCTTCCACTG
  CCCCATGCTG CAAGAAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62812193	NES17355698	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49130431					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62812193	NES17355698	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57531930 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	115 bp distal
Tssr145378	transcription start site region 145378	1795 bp downstream
Tssr145379	transcription start site region 145379	1720 bp downstream
Tssr145380	transcription start site region 145380	1675 bp downstream
Tssr145381	transcription start site region 145381	1621 bp downstream
Tssr145382	transcription start site region 145382	1067 bp downstream
Tssr145383	transcription start site region 145383	990 bp downstream
Tssr145384	transcription start site region 145384	820 bp downstream
Tssr145385	transcription start site region 145385	319 bp upstream
Tssr145386	transcription start site region 145386	1095 bp upstream
Tssr145387	transcription start site region 145387	1326 bp upstream
Tssr145388	transcription start site region 145388	1908 bp upstream
Tssr148945	transcription start site region 148945	1993 bp upstream
Tssr148946	transcription start site region 148946	1981 bp upstream
Tssr148947	transcription start site region 148947	1731 bp upstream
Tssr148948	transcription start site region 148948	1647 bp upstream
Tssr148949	transcription start site region 148949	1591 bp upstream
Tssr148950	transcription start site region 148950	1037 bp upstream
Tssr148951	transcription start site region 148951	1008 bp upstream
Tssr148952	transcription start site region 148952	948 bp upstream
Tssr148953	transcription start site region 148953	767 bp upstream
Tssr148954	transcription start site region 148954	742 bp upstream
Tssr148955	transcription start site region 148955	597 bp upstream
Tssr148956	transcription start site region 148956	564 bp upstream
Tssr148957	transcription start site region 148957	within coordinates
Tssr148958	transcription start site region 148958	173 bp downstream
Tssr148959	transcription start site region 148959	333 bp downstream
Tssr148960	transcription start site region 148960	1087 bp downstream
Tssr148961	transcription start site region 148961	1124 bp downstream
Tssr148962	transcription start site region 148962	1270 bp downstream
Tssr148963	transcription start site region 148963	1322 bp downstream
Tssr148964	transcription start site region 148964	1355 bp downstream
Tssr148965	transcription start site region 148965	1866 bp downstream
Tssr148966	transcription start site region 148966	1883 bp downstream