rs49130554 SNP Detail

Summary

• ID
  rs49130554
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:84563744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGCCCT GTGTTTGGCA
  AGCCCAGATC TACACCCCCC CCCCCAGCCT CTTTCCTTTG GTTCATCCAG TGTGTGCTAA
  TCGCTGTAGG CTATGCTGCG TGCTCCGAGT AGAAGGAAGT GATCCAATTA ATCTAGACAA
  GGATCCCGCT TCCTTAAGCA TGTGGCCGGT CAGAGAGCTT GTCTAGGTCA CACAACCGGA
  R
  CATGAGGAGA CAAAGACCCC AGAGTGCAAC TTAAATGGTT CACTGTTGCT GTAGTCTCCA
  GTTATTACCT CGGAGGACCT GTGTCCTCTT GCAACTGCTC AGTGATTCAG GAACCCCAGA
  CTGCCATGAA TCAACAGCTG GCTCTGGGTT GAGTAGGGGA CTCCTGAAGG AGGGGGATGA
  AGGTGACATT ATTGAGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135427367	ENSMUSSNP1021242	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49130554					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:84563744 () rs orientation: forward

Symbol	Name	Function Class
Gm37240	predicted gene, 37240	within coordinates
Gm64927	predicted gene, 64927	1816 bp upstream
Rr68541	regulatory region 68541	344 bp distal
Rr68542	regulatory region 68542	1657 bp proximal