rs49131383 SNP Detail

Summary

• ID
  rs49131383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:52392394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTAGTTCA GAAGACTGGC
  CGATGGAACG TAAGGGGATA CCTGGGAGAT TTGAGGAAAA ACTTTACAGA TCTTTGGCAG
  AAAACAAATC TAAAGTGAGG CGGGGAGAAG AATCTCTTTG GATTTCATCT CATCCTTCTG
  CTTTGGATTT TTTTCACTTA AGTCACGATT CTTGGAGTGG TTTCAATTGT GTAGACGCTG
  Y
  ATCAAGTTCT CATCTCATTG GGCTAGCCTC ATCCTGGATG TACCTATTCC AGATTTCCTG
  TTAAGCCGAA TTAGAATCTA GTGGTTGCTT TGTATGCCTT TATAACCTTG GTTCAGTGTG
  GATACAGTTT GGTGTTATAG TCAGGGTCTG AGAAGACAAT TTAATACAAA GTCTAGTTGA
  TTACATCTGG TTAGAAGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52300062	NES15306602	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49131383					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52300062	NES15306602	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:52392394 () rs orientation: forward

Symbol	Name	Function Class
Gm47609	predicted gene, 47609	1521 bp upstream
Gm47610	predicted gene, 47610	1995 bp downstream
Gm65895	predicted gene, 65895	within coordinates