rs49133000 SNP Detail

Summary

• ID
  rs49133000
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118428771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTTTGGGA GGAGCGGGAG CGGGGAGCGG CGAGGCTACG
  TCTGCGTCAA GAGACGTTAA ATTTGAAACT TGGCGGCCCG TGCGTGATGG GGGCGTGAGG
  T
  GGCTATTCTG AGAAGGAATC GGGTGCGTGG TTTTGTTTAG GAGCACGGGG TGACGATCTT
  CGCAGCTCCA GAGCCAGCTG AAGGTTGAGG GAGACTCAG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147306066	ENSMUSSNP6901683	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49133000					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118428771 () rs orientation: forward

Symbol	Name	Function Class
Bub1b	BUB1B, mitotic checkpoint serine/threonine kinase	mRNA-UTR
Cpgi12084	CpG island 12084	within coordinates
Rr397211	regulatory region 397211	within coordinates
Rr563273	regulatory region 563273	69 bp distal
Rr563274	regulatory region 563274	within coordinates
Rr563275	regulatory region 563275	807 bp proximal
Tssr19562	transcription start site region 19562	64 bp downstream
Tssr19563	transcription start site region 19563	23 bp downstream
Tssr19564	transcription start site region 19564	within coordinates