rs49133418 SNP Detail

Summary

• ID
  rs49133418
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:7739407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCG GCATGTTCCC AGCATGCTTG
  C
  CACCTAGTAG GAACACAGTA GCTAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146757838	ENSMUSSNP1923997	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss323244382	CHEV_10_7583441	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49133418					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:7739407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1279	CpG island 1279	991 bp distal
Rr216483	regulatory region 216483	607 bp distal
Rr220418	regulatory region 220418	1407 bp distal
Rr223547	regulatory region 223547	within coordinates
Rr223550	regulatory region 223550	587 bp proximal
Rr223552	regulatory region 223552	1096 bp proximal
Rr384104	regulatory region 384104	1044 bp upstream
Tssr92330	transcription start site region 92330	1540 bp downstream
Zc3h12d	zinc finger CCCH type containing 12D	within coordinates