rs49133523 SNP Detail

Summary

• ID
  rs49133523
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34611567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTATTGCCC ACTAACTAGT TACCTTTATT TAACTGGGTT
  CTTCCTTTTA TAAATAAGAA AAGGCTGCCA GAGGTGCTGG TGCACACCCA GGAGGAAGGC
  A
  GAGGCAGAGA GGCAGAGAAG CAGGTGAGTT TGAGGGTCAG CATGGTCTAT AGAGTGAGTT
  CCAGGATAGT CAGTAATACA CAGAGGCCCT GTATCAAAC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322575448	CHEV_8_35207467	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49133523					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34611567 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20243	CpG island 20243	1878 bp proximal
Leprotl1	leptin receptor overlapping transcript-like 1	within coordinates
Rr661961	regulatory region 661961	1486 bp distal
Rr661962	regulatory region 661962	574 bp proximal
Rr661963	regulatory region 661963	1424 bp proximal
Tssr76860	transcription start site region 76860	1543 bp downstream
Tssr76861	transcription start site region 76861	831 bp upstream
Tssr76862	transcription start site region 76862	1912 bp upstream
Tssr76863	transcription start site region 76863	1947 bp upstream
Tssr76864	transcription start site region 76864	1962 bp upstream
Tssr80896	transcription start site region 80896	1734 bp downstream