rs49134275 SNP Detail

Summary

• ID
  rs49134275
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:3400068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTCGAGGT ATACATAAGT GACCCAAAAA ACTCTACAAA
  AAGAACTCCT ACAGCTGATA AACACCTTCA GCAAAGTGAC TGCTGGATGC AAAATTAACT
  W
  AAAAAAAATC AGTAGTTCAC CTTTATACAA ATGATAAATG GGCTGAGAAA GAAATCAGGG
  AAACAACACC CTTCACAATA GACCCAAGTA ACATAAAAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132926240	ENSMUSSNP1948656	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321724847	CHEV_6_3350068	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49134275					SNP	T	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:3400068 () rs orientation: forward

Symbol	Name	Function Class
Rr134883	regulatory region 134883	68 bp distal
Rr146113	regulatory region 146113	467 bp distal
Rr146114	regulatory region 146114	68 bp distal
Rr399551	regulatory region 399551	374 bp downstream
Samd9l	sterile alpha motif domain containing 9-like	610 bp upstream
Tssr59689	transcription start site region 59689	753 bp upstream
Tssr59690	transcription start site region 59690	604 bp upstream
Tssr59691	transcription start site region 59691	494 bp upstream