rs49134942 SNP Detail

Summary

• ID
  rs49134942
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:108904319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TCCTGCCCCT GTGGCATGGT GGGTCATCTT TTGGGTATAT
  TCCCAAGACT GGTATTGCTA GGTCTTCAGG TAGATCTATT TCCAATTTTC TGAGGAACCT
  Y
  CAGATTGATT TCCAGAGTGG TTGTACCAGT TTGCAATCCC ACCAGCAATG GAGGAGTGTT
  CATCTTTTTC CACATTCTAA CATGTGTTGT CACCTGCATT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss134265006	ENSMUSSNP3142184	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49134942					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:108904319 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4049	CpG island 4049	1177 bp distal
Gm36876	predicted gene, 36876	within coordinates
Rr458739	regulatory region 458739	1048 bp proximal
Tssr105627	transcription start site region 105627	1738 bp downstream
Tssr105628	transcription start site region 105628	1667 bp downstream
Tssr105629	transcription start site region 105629	1634 bp downstream
Tssr105630	transcription start site region 105630	1587 bp downstream
Tssr105631	transcription start site region 105631	1499 bp downstream
Tssr111515	transcription start site region 111515	1761 bp upstream
Tssr111516	transcription start site region 111516	1711 bp upstream
Tssr111517	transcription start site region 111517	1640 bp upstream
Tssr111518	transcription start site region 111518	1622 bp upstream
Tssr111519	transcription start site region 111519	1611 bp upstream
Tssr111520	transcription start site region 111520	1553 bp upstream
Tssr111521	transcription start site region 111521	1493 bp upstream