rs49135568 SNP Detail

Summary

• ID
  rs49135568
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45201794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTATGGGA AAAATGAAAA AAATTAATTT AGAGCTTTCT
  GAAGTCTTTA CTTGGAAGAT GAACTCTAAG AAAGGCAATG GCCTCAATAA AGGGATAGTT
  K
  AATGATCAAA CACTTATGGA CATATCTATC TAGGTAGGAG TTGCTTTGAG AAAGGCACAC
  AAAGCTTCAT CCTATCCTTT AATTTACCCA ACTTTAGTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148077384	ENSMUSSNP6311773	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
ss325166145	CHEV_16_45381544	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49135568					SNP	G	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45201794 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	704 bp downstream
Tssr4884	transcription start site region 4884	1259 bp downstream
Tssr4885	transcription start site region 4885	1296 bp downstream
Tssr4886	transcription start site region 4886	1628 bp downstream
Tssr141220	transcription start site region 141220	1168 bp downstream
Tssr141221	transcription start site region 141221	1191 bp downstream
Tssr141222	transcription start site region 141222	1312 bp downstream
Tssr141223	transcription start site region 141223	1325 bp downstream
Tssr141224	transcription start site region 141224	1344 bp downstream
Tssr141225	transcription start site region 141225	1368 bp downstream
Tssr141226	transcription start site region 141226	1420 bp downstream
Tssr141227	transcription start site region 141227	1474 bp downstream
Tssr141228	transcription start site region 141228	1516 bp downstream
Tssr141229	transcription start site region 141229	1532 bp downstream
Tssr141230	transcription start site region 141230	1685 bp downstream
Tssr141231	transcription start site region 141231	1779 bp downstream
Tssr141232	transcription start site region 141232	1831 bp downstream