rs49135722 SNP Detail

Summary

• ID
  rs49135722
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35285622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTG CTCTGTTTAC GTGTCAGTCT
  A
  GACTAAAACG ACCTCTTATT GGACA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148813218	ENSMUSSNP286103	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322157986	CHEV_7_36371216	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49135722					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35285622 () rs orientation: forward

Symbol	Name	Function Class
Ankrd27	ankyrin repeat domain 27	47 bp upstream
Cpgi18874	CpG island 18874	within coordinates
Rgs9bp	regulator of G-protein signalling 9 binding protein	615 bp upstream
Rr167549	regulatory region 167549	within coordinates
Rr400265	regulatory region 400265	within coordinates
Tssr65908	transcription start site region 65908	35 bp upstream
Tssr65909	transcription start site region 65909	98 bp upstream
Tssr72043	transcription start site region 72043	647 bp upstream
Tssr72044	transcription start site region 72044	630 bp upstream
Tssr72045	transcription start site region 72045	595 bp upstream
Tssr72046	transcription start site region 72046	740 bp downstream