rs49136074 SNP Detail

Summary

• ID
  rs49136074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32752145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGTGTG AGCCTTTGAA
  ACCCCAAAGC CCACCCCCAG TGACACACTT CTTTCAGCAA GGCCACACCT ACTCCAGCAA
  GGGCATACCT CCTAATGCCT GTCTTAGTGC CTCTCCCTAG TGACCAAGTA CTCAAATCTA
  TGAGCCTGTG GGGGCCATTC CTATTCAAAC CTCCATACCC TGTTTCTGTG TCTGAGAAGT
  Y
  GAGATTCCAG TTACCTGTAA TCTGAGCAGC GCTTGCACAG AAATGTCAGG GAACATAAGA
  TGGTGCTTTC TATCATTCCT CATAATACAT ATATCTACAC TAAAATGTCT ATGTTGAAAT
  TTGCCTTTCA TAGTCACTTA CTTTGTGTAT TTTACAGTAT GGAGTAATTC TAGGTATACC
  TATTTTTTAA GAGGAATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60384454	NES15878098	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49136074					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60384454	NES15878098	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32752145 () rs orientation: forward

Symbol	Name	Function Class
Rr575012	regulatory region 575012	49 bp proximal
Rr575013	regulatory region 575013	264 bp proximal
Rr575014	regulatory region 575014	400 bp proximal