rs49136439 SNP Detail

Summary

• ID
  rs49136439
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37513573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTGTACTG ACGCAGAATG TTGTTACCAG
  GTAGAAGCCA GGGCTCACGG CATTTATTTC TGTCTCTTGG ACAACAGCCT TACCCTGCAG
  AGTCTACGGC CTAGTGTCTC AGAATGGTCA ACTGGACATT TCCCTTCTCT CTAGCTGCTT
  C
  ATGTCAGAAG GTTCACCACC ACCAGAAACA CACTTGATTT TACATACTAA AGAGACAGTG
  AGAATTCCAG GAAGGTAATT TGTACCTGAC AATCAGCAGG ACCAAGAGGA CAGACAGCAT
  GTTCAAAAAT GGGGTTGAAA GCTTATGaaa                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss148941510	ENSMUSSNP5838827	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss319691768	CHEV_1_37531337	CHEVERUD	SCREENING_POP	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs49136439					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37513573 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	151 bp upstream
Rr409535	regulatory region 409535	789 bp distal
Rr409536	regulatory region 409536	within coordinates
Tssr11302	transcription start site region 11302	963 bp downstream