rs49137171 SNP Detail

Summary

• ID
  rs49137171
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30815425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGACCTGAG CCAGATAAAC AGCCCAGAAG GCCATCTACA
  CCCGCGTGTG GCCCCGCTGG CATCTGAGTC ACGACAGCTG TCCGCACACA GCAGGCTACC
  S
  GCTTGCCCTC TCTGCTGGTC CCTGTACCTC TTCCAGCCAC GGACCTGAAG CCTCTCTCAG
  GCGGGGTCAC ACTGGTTCTG CCTGGCCAAT GATCCTGGC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322139443	CHEV_7_31901019	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49137171					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30815425 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	within coordinates
Hpn	hepsin	710 bp upstream
Rr645021	regulatory region 645021	729 bp distal
Rr645022	regulatory region 645022	220 bp distal
Rr645023	regulatory region 645023	596 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	524 bp downstream
Tssr71932	transcription start site region 71932	1284 bp upstream
Tssr71933	transcription start site region 71933	692 bp upstream
Tssr71934	transcription start site region 71934	892 bp downstream