rs49137938 SNP Detail

Summary

• ID
  rs49137938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21870277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGGCAGG AACAAGGTGC
  TCTGCATTCA GGTGAGAGGA GAGAATCAAC TTCCATACAT GAACTGAGGC ATGCCTGCAC
  CCACACTCAC GCCATACATA CACAAATAAG ACAAAGTCAA GGTAGAAAAA TCGATATATA
  TATATATTTC TATATACAGA CAGATAACTC TTAATCTTAA CATTGCAAGG CTGTCTCTTC
  Y
  TGCTCAGAGG GCCAAGGTCA GCTCTGACTT TAAGTATGGC TTCACCAATC CCGTTCAAGA
  CGTTGTAGGC TGGAGTCCTA GGAGCAGGCC ACATAGCCGG GATGCAGAGG CTCTGAGTCT
  GGGACAAGGC TGTTCTCATA GGGGTGGGAG TAGGGGCCAT CAGATGAGTC CCCGTGGACT
  CCCTGAGAGC CCCCCGAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61359802	NES16733528	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49137938					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61359802	NES16733528	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21870277 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21464	CpG island 21464	1460 bp proximal
Epor	erythropoietin receptor	within coordinates
Rr675079	regulatory region 675079	1855 bp proximal
Swsap1	SWIM type zinc finger 7 associated protein 1	717 bp downstream