rs49138139 SNP Detail

Summary

• ID
  rs49138139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99871680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTCTGAA AGAAGACAAA
  CTCCTGGGGA GAGCCACGCC TGGCAGGCAC TCTCCCTGGT CATTAAAGAG CCCTTCCTTC
  TCTACCACTG TCTTTCCATC ATGCTGTGGA TGGCTCCTGG CTCCCTCCTC CTCACACTCT
  CATTCTGTCA TCTTTAAAAC TGCAGCCATG GCGTGTGGGC CTGGGTACCA GAGGTTTTCC
  R
  CGGAGATCTC TGGCCAGGCT TGGTGAGAAG GTTCCAGCGA AGGGAAGTGA GTGCAGGCAG
  GGAGAAGAAG TCTCTGCCGT GCCTTCCAGG TCACTCCTTA ACTTGGCCAC TCTGCGTCAG
  GTTGGGCTGG GCCAACAAGA AGCCAACTAT CCAGTGAGGA GTGTGGCAGG ACTTCAGGTG
  GCACTTCGGA AAAGAAGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss132715988	ENSMUSSNP5162325	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss323830102	CHEV_11_99842168	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49138139					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99871680 () rs orientation: forward

Symbol	Name	Function Class
Krtap29-1	keratin associated protein 29-1	1801 bp upstream
Tssr110719	transcription start site region 110719	1751 bp upstream